-----------------------------------------------------------------------------
- Banjo                        Bayesian Network Inference with Java Objects -
- Release 2.2.0                                                 15 Apr 2008 -
- Licensed from Duke University                                             -
- Copyright (c) 2005-08 by Alexander J. Hartemink                           -
- All rights reserved                                                       -
-----------------------------------------------------------------------------
- Project:                                                               50.4
- User:                                                              lsand039
- Dataset:                                  50-vars-377-temporal-observations
- Notes:                                    static bayesian network inference
-----------------------------------------------------------------------------
- Settings file:                                                             
-----------------------------------------------------------------------------
- Input directory:                                 data/release2.0/runA/input
- Observations file:                                                   50.txt
- Observation count:                                                      377
- Number of variables:                                                     51
- Variables are in rows:                                                  yes
- Variable names:                                                      inFile
- Discretization policy:                                                   i7
- Exceptions to the discretization policy:                               none
-----------------------------------------------------------------------------
- Initial structure file:                                                    
- 'Must be present' edges file:                                              
- 'Must not be present' edges file:                                          
- Min. Markov lag:                                                          0
- Max. Markov lag:                                                          0
- Max. parent count:                                                        5
- Equivalent sample size for Dirichlet parameter prior:                   1.0
-----------------------------------------------------------------------------
- Searcher:                                                 SearcherSimAnneal
- Proposer:                                           ProposerRandomLocalMove
- Evaluator:                                        defaulted to EvaluatorBDe
- Decider:                                     defaulted to DeciderMetropolis
-----------------------------------------------------------------------------
- Pre-compute logGamma:                                                    no
- Cache:                                                           fastLevel1
- Cycle checking method:                                   Depth-first Search
-----------------------------------------------------------------------------
- Initial temperature:                                                  25000
- Cooling factor:                                                         0.7
- Reannealing temperature:                                                800
- Max. accepted networks before cooling:                                  250
- Max. proposed networks before cooling:                                25000
- Min. accepted networks before reannealing:                              250
-----------------------------------------------------------------------------
- Output directory:                               data/release2.0/runA/output
- Report file:                      50.4static.report.2016.09.01.20.11.13.txt
- Number of best networks tracked:                                          1
- Max. time:                                                            4.0 h
- Max. restarts:                                                        25000
- Min. networks before checking:                                          250
- Screen reporting interval:                                           10.0 m
- File reporting interval:                                             2.05 h
-----------------------------------------------------------------------------
- Compute influence scores:                                               yes
- Compute consensus graph:                                                yes
- Create consensus graph as HTML:                                         yes
- Create 'dot' output:                                                    yes
- Location of 'dot':  /usr/bin/dot /usr/bin/X11/dot /usr/share/man/man1/dot.1.gz
-----------------------------------------------------------------------------
- XML output directory:                           data/release2.0/runA/output
- XML Report file:                                                           
- XML settings to export:                                                    
- XML parser:                             org.apache.xerces.parsers.SAXParser
- Banjo XML format version:                                               1.0
-----------------------------------------------------------------------------
- Seed for starting search:                                     1472775073652
-----------------------------------------------------------------------------
- Number of threads:                                                        1
-----------------------------------------------------------------------------

Memory info before starting the search: Banjo is using 1 mb of memory
Prep. time used: 489.0 ms
Beginning to search: expect a status report every 10.0 m

Status:  Networks   43876750
         Time       10.0 m (4.1% of max. 4.0 h)
         Re-anneals 456 (1.8% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   81667750
         Time       20.0 m (8.3% of max. 4.0 h)
         Re-anneals 826 (3.3% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   116656250
         Time       30.0 m (12.5% of max. 4.0 h)
         Re-anneals 1196 (4.7% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   152300250
         Time       40.0 m (16.6% of max. 4.0 h)
         Re-anneals 1547 (6.1% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   187894500
         Time       50.0 m (20.8% of max. 4.0 h)
         Re-anneals 1902 (7.6% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   223569250
         Time       1.0 h (25.0% of max. 4.0 h)
         Re-anneals 2276 (9.1% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   258989500
         Time       1.17 h (29.1% of max. 4.0 h)
         Re-anneals 2600 (10.4% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   297764000
         Time       1.33 h (33.3% of max. 4.0 h)
         Re-anneals 2988 (11.9% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   337047250
         Time       1.5 h (37.5% of max. 4.0 h)
         Re-anneals 3405 (13.6% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   375957250
         Time       1.67 h (41.6% of max. 4.0 h)
         Re-anneals 3799 (15.1% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   416005000
         Time       1.83 h (45.8% of max. 4.0 h)
         Re-anneals 4210 (16.8% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   455965500
         Time       2.0 h (50.0% of max. 4.0 h)
         Re-anneals 4603 (18.4% of max. 25000)
         Banjo is using 5 mb of memory


-----------------------------------------------------------------------------
- Intermediate report                                     Best network so far
-----------------------------------------------------------------------------

Network score: -8218.0074, first found at iteration 76931633
51
 0 3 1 2 46
 1 1 27
 2 2 28 48
 3 3 27 28 49
 4 2 1 10
 5 2 13 25
 6 2 13 36
 7 2 12 20
 8 1 27
 9 2 40 42
10 2 13 29
11 2 9 24
12 3 26 41 42
13 2 28 50
14 2 11 48
15 2 16 29
16 2 13 37
17 2 1 13
18 2 3 13
19 2 26 49
20 2 33 49
21 2 10 16
22 2 12 18
23 2 3 28
24 1 27
25 2 3 19
26 2 28 42
27 1 28
28 0
29 2 17 23
30 2 2 50
31 2 13 42
32 2 37 48
33 2 0 49
34 2 17 28
35 2 1 16
36 2 11 26
37 2 27 38
38 2 11 19
39 2 3 49
40 2 26 39
41 2 17 19
42 2 23 39
43 2 4 5
44 2 3 13
45 2 11 40
46 2 11 48
47 1 27
48 2 13 38
49 2 13 28
50 1 27

-----------------------------------------------------------------------------


Status:  Networks   496331750
         Time       2.17 h (54.1% of max. 4.0 h)
         Re-anneals 5012 (20.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   536693250
         Time       2.33 h (58.3% of max. 4.0 h)
         Re-anneals 5409 (21.6% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   577481500
         Time       2.5 h (62.5% of max. 4.0 h)
         Re-anneals 5844 (23.3% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   618339250
         Time       2.67 h (66.6% of max. 4.0 h)
         Re-anneals 6246 (24.9% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   658314750
         Time       2.83 h (70.8% of max. 4.0 h)
         Re-anneals 6656 (26.6% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   697845250
         Time       3.0 h (75.0% of max. 4.0 h)
         Re-anneals 7072 (28.2% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   737313250
         Time       3.17 h (79.1% of max. 4.0 h)
         Re-anneals 7468 (29.8% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   777180750
         Time       3.33 h (83.3% of max. 4.0 h)
         Re-anneals 7881 (31.5% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   817218250
         Time       3.5 h (87.5% of max. 4.0 h)
         Re-anneals 8315 (33.2% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   857212000
         Time       3.67 h (91.6% of max. 4.0 h)
         Re-anneals 8714 (34.8% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   897163250
         Time       3.83 h (95.8% of max. 4.0 h)
         Re-anneals 9140 (36.5% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   937153000
         Time       4.0 h (100.0% of max. 4.0 h)
         Re-anneals 9548 (38.1% of max. 25000)
         Banjo is using 5 mb of memory



-----------------------------------------------------------------------------
- Final report                                           Best network overall
-----------------------------------------------------------------------------


Network score: -8218.0074, first found at iteration 76931633
51
 0 3 1 2 46
 1 1 27
 2 2 28 48
 3 3 27 28 49
 4 2 1 10
 5 2 13 25
 6 2 13 36
 7 2 12 20
 8 1 27
 9 2 40 42
10 2 13 29
11 2 9 24
12 3 26 41 42
13 2 28 50
14 2 11 48
15 2 16 29
16 2 13 37
17 2 1 13
18 2 3 13
19 2 26 49
20 2 33 49
21 2 10 16
22 2 12 18
23 2 3 28
24 1 27
25 2 3 19
26 2 28 42
27 1 28
28 0
29 2 17 23
30 2 2 50
31 2 13 42
32 2 37 48
33 2 0 49
34 2 17 28
35 2 1 16
36 2 11 26
37 2 27 38
38 2 11 19
39 2 3 49
40 2 26 39
41 2 17 19
42 2 23 39
43 2 4 5
44 2 3 13
45 2 11 40
46 2 11 48
47 1 27
48 2 13 38
49 2 13 28
50 1 27


-----------------------------------------------------------------------------
- Search Statistics                                                          
-----------------------------------------------------------------------------

Statistics collected in searcher 'SearcherSimAnneal':
  Number of networks examined: 937153000
  Total time used: 4.0 h
  High score: -8218.0074, first found at iteration 76931633
  Number of re-anneals: 9548

Statistics collected in proposer 'ProposerRandomLocalMove':
  Additions -- proposed:    312328252
  Deletions -- proposed:    312443948
  Reversals -- proposed:    312380799

Statistics collected in cycle checker 'CycleCheckerCheckThenApply':
  Additions -- considered:  312328252,  acyclic:  223767309
  Deletions -- no cyclicity test necessary
  Reversals -- considered:  312380799,  acyclic:  207691904

Statistics collected in evaluator 'EvaluatorBDe':
  Scores computed:          343501595
  Scores (cache)            placed         fetched        
      with 0 parents:       51             36466610       
      with 1 parents:       2550           453843311      
      with 2 parents:       49837511       24336548       
      with 3 parents:       275348609      88851224       
      with 4 parents:       17187449       4428226        
      with 5 parents:       1125425        170203         

Statistics collected in decider 'DeciderMetropolis':
  Additions -- considered:  223767309,  better score:  12384238,  other accepted:  8749583
  Deletions -- considered:  312443948,  better score:  9024616,  other accepted:  12109102
  Reversals -- considered:  207691904,  better score:  14044303,  other accepted:  7405805
  Average permissivity:     0.04

Memory info after completing the search: Banjo is using 5 mb of memory


Network score: -8218.0074, found by thread 1
51
 0 3 1 2 46
 1 1 27
 2 2 28 48
 3 3 27 28 49
 4 2 1 10
 5 2 13 25
 6 2 13 36
 7 2 12 20
 8 1 27
 9 2 40 42
10 2 13 29
11 2 9 24
12 3 26 41 42
13 2 28 50
14 2 11 48
15 2 16 29
16 2 13 37
17 2 1 13
18 2 3 13
19 2 26 49
20 2 33 49
21 2 10 16
22 2 12 18
23 2 3 28
24 1 27
25 2 3 19
26 2 28 42
27 1 28
28 0
29 2 17 23
30 2 2 50
31 2 13 42
32 2 37 48
33 2 0 49
34 2 17 28
35 2 1 16
36 2 11 26
37 2 27 38
38 2 11 19
39 2 3 49
40 2 26 39
41 2 17 19
42 2 23 39
43 2 4 5
44 2 3 13
45 2 11 40
46 2 11 48
47 1 27
48 2 13 38
49 2 13 28
50 1 27

-----------------------------------------------------------------------------
- Post-processing                                            Influence scores
-----------------------------------------------------------------------------

Influence score for  (46,0) ->   (0,0)   .0549
Influence score for   (2,0) ->   (0,0)   .1091
Influence score for   (1,0) ->   (0,0)   -.2341
Influence score for  (27,0) ->   (1,0)   .6308
Influence score for  (48,0) ->   (2,0)   .1490
Influence score for  (28,0) ->   (2,0)   .1490
Influence score for  (49,0) ->   (3,0)   .0000
Influence score for  (28,0) ->   (3,0)   .0000
Influence score for  (27,0) ->   (3,0)   .0000
Influence score for  (10,0) ->   (4,0)   -.1644
Influence score for   (1,0) ->   (4,0)   .2622
Influence score for  (25,0) ->   (5,0)   .4972
Influence score for  (13,0) ->   (5,0)   .2654
Influence score for  (36,0) ->   (6,0)   .3307
Influence score for  (13,0) ->   (6,0)   .4923
Influence score for  (20,0) ->   (7,0)   .3211
Influence score for  (12,0) ->   (7,0)   .0647
Influence score for  (27,0) ->   (8,0)   .6525
Influence score for  (42,0) ->   (9,0)   .3712
Influence score for  (40,0) ->   (9,0)   .0000
Influence score for  (29,0) ->  (10,0)   .4972
Influence score for  (13,0) ->  (10,0)   .0000
Influence score for  (24,0) ->  (11,0)   .0000
Influence score for   (9,0) ->  (11,0)   .0000
Influence score for  (42,0) ->  (12,0)   .1264
Influence score for  (41,0) ->  (12,0)   .0790
Influence score for  (26,0) ->  (12,0)   -.0549
Influence score for  (50,0) ->  (13,0)   .0000
Influence score for  (28,0) ->  (13,0)   .2459
Influence score for  (48,0) ->  (14,0)   .0000
Influence score for  (11,0) ->  (14,0)   .0000
Influence score for  (29,0) ->  (15,0)   .3105
Influence score for  (16,0) ->  (15,0)   .3105
Influence score for  (37,0) ->  (16,0)   .0000
Influence score for  (13,0) ->  (16,0)   .3286
Influence score for  (13,0) ->  (17,0)   .5352
Influence score for   (1,0) ->  (17,0)   -.1338
Influence score for  (13,0) ->  (18,0)   .0000
Influence score for   (3,0) ->  (18,0)   .0741
Influence score for  (49,0) ->  (19,0)   .3264
Influence score for  (26,0) ->  (19,0)   .0000
Influence score for  (49,0) ->  (20,0)   .3305
Influence score for  (33,0) ->  (20,0)   .0000
Influence score for  (16,0) ->  (21,0)   .0000
Influence score for  (10,0) ->  (21,0)   .1664
Influence score for  (18,0) ->  (22,0)   .0000
Influence score for  (12,0) ->  (22,0)   .0000
Influence score for  (28,0) ->  (23,0)   .3311
Influence score for   (3,0) ->  (23,0)   .3311
Influence score for  (27,0) ->  (24,0)   .0000
Influence score for  (19,0) ->  (25,0)   .0000
Influence score for   (3,0) ->  (25,0)   .0000
Influence score for  (42,0) ->  (26,0)   .2434
Influence score for  (28,0) ->  (26,0)   .3145
Influence score for  (28,0) ->  (27,0)   .0000
Influence score for  (23,0) ->  (29,0)   .0000
Influence score for  (17,0) ->  (29,0)   .2840
Influence score for  (50,0) ->  (30,0)   .3221
Influence score for   (2,0) ->  (30,0)   .0077
Influence score for  (42,0) ->  (31,0)   .3307
Influence score for  (13,0) ->  (31,0)   .3307
Influence score for  (48,0) ->  (32,0)   .2983
Influence score for  (37,0) ->  (32,0)   .0000
Influence score for  (49,0) ->  (33,0)   .6631
Influence score for   (0,0) ->  (33,0)   .1186
Influence score for  (28,0) ->  (34,0)   .1619
Influence score for  (17,0) ->  (34,0)   .3311
Influence score for  (16,0) ->  (35,0)   .0000
Influence score for   (1,0) ->  (35,0)   .0000
Influence score for  (26,0) ->  (36,0)   -.3331
Influence score for  (11,0) ->  (36,0)   .0000
Influence score for  (38,0) ->  (37,0)   -.3331
Influence score for  (27,0) ->  (37,0)   .2475
Influence score for  (19,0) ->  (38,0)   .1623
Influence score for  (11,0) ->  (38,0)   .0772
Influence score for  (49,0) ->  (39,0)   .1641
Influence score for   (3,0) ->  (39,0)   .0000
Influence score for  (39,0) ->  (40,0)   .3308
Influence score for  (26,0) ->  (40,0)   -.1646
Influence score for  (19,0) ->  (41,0)   .0000
Influence score for  (17,0) ->  (41,0)   .2581
Influence score for  (39,0) ->  (42,0)   .0000
Influence score for  (23,0) ->  (42,0)   .1664
Influence score for   (5,0) ->  (43,0)   -.3311
Influence score for   (4,0) ->  (43,0)   -.1667
Influence score for  (13,0) ->  (44,0)   .2052
Influence score for   (3,0) ->  (44,0)   .3307
Influence score for  (40,0) ->  (45,0)   .1644
Influence score for  (11,0) ->  (45,0)   .3144
Influence score for  (48,0) ->  (46,0)   .0000
Influence score for  (11,0) ->  (46,0)   .0000
Influence score for  (27,0) ->  (47,0)   .6554
Influence score for  (38,0) ->  (48,0)   .1624
Influence score for  (13,0) ->  (48,0)   .3124
Influence score for  (28,0) ->  (49,0)   .3307
Influence score for  (13,0) ->  (49,0)   .3307
Influence score for  (27,0) ->  (50,0)   .6153

-----------------------------------------------------------------------------
- Post-processing                                  DOT graphics format output
-----------------------------------------------------------------------------

digraph abstract { 

label = "Banjo Version 2.2.0\nHigh scoring network, score: -8218.0074\nProject: 50.4\nUser: lsand039\nDataset: 50-vars-377-temporal-observations"; 
labeljust="l"; 

    0 [label="Alzheimer"];
    1 [label="GNG4"];
    2 [label="THBS1"];
    3 [label="SIX6"];
    4 [label="GRIK1"];
    5 [label="WWC1"];
    6 [label="KIR2DS3"];
    7 [label="CEACAM6"];
    8 [label="NDUFA7"];
    9 [label="TLR8"];
    10 [label="FAIM3"];
    11 [label="MDFIC"];
    12 [label="GH1"];
    13 [label="REG1B"];
    14 [label="NTRK1"];
    15 [label="PDZD3"];
    16 [label="EDN1"];
    17 [label="ERGIC3"];
    18 [label="S100A2"];
    19 [label="HS3ST1"];
    20 [label="OR12D3"];
    21 [label="BCL3"];
    22 [label="PTGER1"];
    23 [label="LBP"];
    24 [label="MAP3K13"];
    25 [label="LAG3"];
    26 [label="CAMP"];
    27 [label="MLLT1"];
    28 [label="DSG3"];
    29 [label="CYP2C18"];
    30 [label="LPHN2"];
    31 [label="TTC12"];
    32 [label="KANK2"];
    33 [label="KIR2DS5"];
    34 [label="PF4"];
    35 [label="MCF2L2"];
    36 [label="OSBPL1A"];
    37 [label="AP3B2"];
    38 [label="ABCA1"];
    39 [label="SGPL1"];
    40 [label="NTNG1"];
    41 [label="NFE2"];
    42 [label="CABP5"];
    43 [label="NOC2L"];
    44 [label="PTK7"];
    45 [label="CFTR"];
    46 [label="NPY6R"];
    47 [label="SHANK1"];
    48 [label="SNTB2"];
    49 [label="ST8SIA2"];
    50 [label="BMPR2"];

    1->0;
    2->0;
    46->0;
    27->1;
    28->2;
    48->2;
    27->3;
    28->3;
    49->3;
    1->4;
    10->4;
    13->5;
    25->5;
    13->6;
    36->6;
    12->7;
    20->7;
    27->8;
    40->9;
    42->9;
    13->10;
    29->10;
    9->11;
    24->11;
    26->12;
    41->12;
    42->12;
    28->13;
    50->13;
    11->14;
    48->14;
    16->15;
    29->15;
    13->16;
    37->16;
    1->17;
    13->17;
    3->18;
    13->18;
    26->19;
    49->19;
    33->20;
    49->20;
    10->21;
    16->21;
    12->22;
    18->22;
    3->23;
    28->23;
    27->24;
    3->25;
    19->25;
    28->26;
    42->26;
    28->27;
    17->29;
    23->29;
    2->30;
    50->30;
    13->31;
    42->31;
    37->32;
    48->32;
    0->33;
    49->33;
    17->34;
    28->34;
    1->35;
    16->35;
    11->36;
    26->36;
    27->37;
    38->37;
    11->38;
    19->38;
    3->39;
    49->39;
    26->40;
    39->40;
    17->41;
    19->41;
    23->42;
    39->42;
    4->43;
    5->43;
    3->44;
    13->44;
    11->45;
    40->45;
    11->46;
    48->46;
    27->47;
    13->48;
    38->48;
    13->49;
    28->49;
    27->50;
}

